Hmm, maybe I am getting things confused.
anyway, the message seems to come from Xerces (1.x). Form other experience, this could be easily caused by a wrong encoding declaration. Perhaps it would help to see the first few lines of the XML input, but all in all it seems to be more of a case for the cocoon-users list.
XSL-List info and archive: http://www.mulberrytech.com/xsl/xsl-list
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